PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g02650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 392aa    MW: 43311 Da    PI: 7.9406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g02650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-11124147326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+ f+r+G C++Gd C FaHg
  Tp1g02650 124 GEVCPEFRRGGDCSRGDDCEFAHG 147
                689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.535121149IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6121148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6121151IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8125147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6125149IPR000571Zinc finger, CCCH-type
SMARTSM003562.5157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDVVRPTVEI PPRKLLLSSK SFPAESSPRS SPRKHNWNSK SNKIAISEHE EDSFNDENNN  60
NKESKEYCYD SDTDDPYASD HFRMFEFKIR RCTRSRSHDW TDCPFAHPGE KARRRDPRRF  120
QYSGEVCPEF RRGGDCSRGD DCEFAHGVFE CWLHPIRYRT EACKDGKHCK RKVCFFAHSP  180
RQLRVLPPEN ASGVSASATS TKSPCCLFCS SSPTSTLLGS LSHLSRSPSL SPPMSPAHKA  240
AAFSRLRNRA ASAVSAAAAA GSVNYKDVLS DLVNSLDSMS LAEALQVSSS SPVTTPVSAA  300
AAAFASSCGL SNQHLHLQHQ QQQSSPLQFS LSPSTPSYLA NSPRANFFGD DFTPRQRQMN  360
DFTPVASVRD KTNFDDGSCG DPDLGWVNDL LT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418203.10.0hypothetical protein EUTSA_v10007884mg
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLV4MW890.0V4MW89_EUTSA; Uncharacterized protein
STRINGBra015264.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-161C3H family protein